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Reproducible research involves the careful, annotated preservation of data, analysis code, and associated files, such that statistical procedures, output, and published results can be directly and fully replicated. As the push for reproducible research has grown, the R community has responded with an increasingly large set of tools for engaging in reproducible research practices (see, for example, the ReproducibleResearch Task View on CRAN). Most of these tools focus on improving one’s own workflow through closer integration of data analysis and report generation....
We just released a new version of taxize - version 0.2.0. This release contains a number of new features, and bug fixes. Here is a run down of some of the changes: 🔗 First, install and load taxize install.packages("rgbif") library(taxize) 🔗 New things 🔗 New functions: class2tree Sometimes you just want to have a visual of the taxonomic relationships among taxa. If you don’t know how to build a molecular phylogeny, don’t have time, or there just isn’t molecular data, you can sorta build one using taxonomy....
This post was updated on August 20, 2014, with AntWeb version 0.7.2.99. Please install an updated version to make sure the code works. -- This post was updated on August 20, 2014, with AntWeb version 0.7.2.99. Please install an updated version to make sure the code works. Data on more than 10,000 species of ants recorded worldwide are available through from California Academy of Sciences’ AntWeb, a repository that boasts a wealth of natural history data, digital images, and specimen records on ant species from a large community of museum curators....
rgbif is an R package to search and retrieve data from the Global Biodiverity Information Facilty (GBIF). rgbif wraps R code around the [GBIF API][gbifapi] to allow you to talk to GBIF from R. We just pushed a new verion of rgbif to cran - v0.5.0. Source and binary files are now available on CRAN. There are a few new functions: count_facet, elevation, and installations. These are described, with examples, below....
In a recent blog post we discussed caching calls to the web offline, on your own computer. Just like you can cache data on your own computer, a data provider can do the same thing. Most of the data providers we work with do not provide caching. However, at least one does: EOL, or Encyclopedia of Life. EOL allows you to set the amount of time (in seconds) that the call is cached, within which time you can make the same call and get the data back faster....
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